international online community for dna barcoding professionals
-
C.Vadivalagan
- Male
- Coimbatore
- India
- Blog Posts
- Discussions (32)
- Events
- Groups (5)
- Photos (63)
- Photo Albums (1)
- Videos
C.Vadivalagan's Groups
-
Freshwater Fish Taxonomi…
7 members
-
Connect Group Moderators
28 members
C.Vadivalagan's Discussions
software
2 Replies
Dear all, I am completed my all field collection and laboratory work, now I am planning to test bioinformatics work and DNA Barcoding. Regarding DNA Barcoding which software is ideal for animals and plants. Thanking you allContinue
Started this discussion. Last reply by C.Vadivalagan Apr 19.
C.Vadivalagan's Page
Latest Activity
C.Vadivalagan commented on Gaikwad Swapnil Sopan's group 'Problems in DNA barcoding'"Dear all,
I Have completed my molecular Biology work now am planing to move on computation work (Barcoding) now i done molecular Phylogeny and protein Docking but i didnt get any idea about coding software.
can…"
C.Vadivalagan replied to C.Vadivalagan's discussion 'software'"Dear Sir,
Thank you for your response regarding my queries,but for now I have completed sequence alignment and Phylogenetic work using MEGA5 and CLUSTAL W softwares.Further, I am planning…"
C.Vadivalagan replied to C.Vadivalagan's discussion 'pimer - req'"i tryed lot its for good u just try and get it soure
"
Fiona Nelima Mumoki replied to C.Vadivalagan's discussion 'pimer - req'"Have you tried it already? IS the official barcode not being used for Odonata? I assume you are talking about dragonflies etc.
Well I think the partial COI (by uce of the Folmer primers) should work. If not, that could be interesting even for me.…"
Fiona Nelima Mumoki replied to C.Vadivalagan's discussion 'pimer - req'"I think that if you are doing barcoding of insects the best possible way to start is with the partial COI gene in the mitochondria as this is officially the barcode gene for insects and other organisms. You could extract DNA and amplify using…"
Anoja Kurian replied to C.Vadivalagan's discussion 'primer' in the group Problems in DNA barcoding"thank you sir.
"
C.Vadivalagan replied to C.Vadivalagan's discussion 'primer' in the group Problems in DNA barcoding"hello anna,
i think following link is helpfull for you.
Gibson, J. F., S. Kelso, M. D. Jackson, J. H. Kits, G. F. G. Miranda, and J.H. Skevington. 2011. Diptera-specific PCR-amplification primers of use in molecular phylogenetic research. Annals of…"
Anoja Kurian replied to C.Vadivalagan's discussion 'primer' in the group Problems in DNA barcoding"hi vadivalagan,
now am working on diptera and hymenoptera! i could not get a specific primer for both of these orders...yet!
thank you"
C.Vadivalagan replied to C.Vadivalagan's discussion 'primer' in the group Problems in DNA barcoding"Hello Anna,
Am working on DNA Barcoding of insects. But I used many primer based on the species. Regarding your question, I have one doubt. If you have chosen…"
Anoja Kurian replied to C.Vadivalagan's discussion 'primer' in the group Problems in DNA barcoding"have u got a specific primer for the species identification of insects ? am working presently on DNA Barcoding of insects, but i could not get amplification with a CO1 gene. if u have got a primer, can u suggest me a specific primer?
"
C.Vadivalagan added a discussion to the group Problems in DNA barcoding
primer
Hello sir/madam, I am currently working on DNA Barcoding of the odonata.Am in the initial stages of sample collection and only limited referece are available on this area of study.Already,literature is available on 16s and 28s mitochondrial genes,there is no data available on the CO1 gene.So please suggest me which gene is ideal for the species identification and if any specific primer is suitable for the data mentioned above kindly suggest me,do the needful.See More
C.Vadivalagan posted a discussionpimer - req
Hello sir/madam, I am currently working on DNA Barcoding of the odonata.Am in the initial stages of sample collection and only limited referece are available on this area of study.Already,literature is available on 16s and 28s mitochondrial genes,there is no data available on the CO1 gene.So please suggest me which gene is ideal for the species identification and if any specific primer is suitable for the data mentioned above kindly suggest me,do the needful.See More
Profile Information
- Institution/Organization
- Bharathiar university
- Title/Position
- Doctoral student
- Website
- http://www.b-u.ac.in
- I’m involved in, or am interested in the following barcoding initiatives
- DNA Barcoding Initiative for Conservation
- I’m involved in or interested in the following iBOL Working Groups
- WG1.1 Vertebrates, WG1.4 Human Pathogens and Zoonoses, WG1.5 Agricultural and Forestry Pests and Their Parasitoids, WG2.2 Museum Life, WG2.3 Methodological Innovation
- Keywords about my barcoding projects (separate each choice with a comma)
- molecular identification of DNA barcoding on road killed animal in sancturies and national park of nilgiri biosphere reserve (NBR), South India.
- I’m involved in the following aspects of barcoding:
- Fieldwork/specimen collecting, Museum work/specimen curation, Labwork/generating barcode sequences, Using barcode data in taxonomy/systematic biology, Other
- If Other area, please specify
- DNA Barcoding on Snake venom
- Current Project(s)
- Molecular identification of DNA barcoding on road killed animal in sanctuaries and National park of Nilgiri Biosphere Reserve (NBR), South India
funded by Ministry of Human Resource & Developement Groups (UGC - RGNF)
C.Vadivalagan's Photos
Comment Wall (3 comments)
- At 12:41am on October 10, 2011,
Gaikwad Swapnil Sopan said… Dear C.Vadivalagan,
I am going to submit my PhD in December. I have already done DNA barcoding for more than 150 species from Western Ghats. My work is already published .I had already left my Email Id with you. you can mail me your plan. I will surely like to help you in this regard.
Swapnil
- At 3:08am on October 7, 2011, Gaikwad Swapnil Sopan said…
- Following is mail ID. Please contact me on the same. I am out of station and I don't get range here but I will be able to reply you via mail.
Email: ssg.uop@gmail.com
Regards
Swapnil
- At 10:42am on September 13, 2010,
Matthew Sileo said… - Hello and welcome!
Thank you for taking the time to join. Here are a few things that you can do in the community.
After completing your online profile, please add yourself to the member map. Next, invite your colleagues and search our members for people you know and invite them to be your colleague in the network. Or browse our Forum and ask a question.
Please join a Group or start your own, as groups are a great way to express your special interest, be it a taxonomic group, a regional or organizational affiliation.
Have a question? Ask one of our hosts.
A few more...
Please contribute to our Blog. Simply choose “Add a Blog Post” under Blogs.
If you already have a blog, you can share it through RSS either on your page or on our rss pages. Just ask me how.
Or create a group and invite colleagues to join. Use “Send Message to Group” to email everyone in your group, start discussions specific to your group’s interests, add widgets and more.
For assistance, don’t hesitate to contact me.
Again, thank you for joining our growing online community. I look forward to connecting with you soon.
-Matt Sileo
© 2012 Created by Matthew Fisher.
Powered by
