Vijaykumar Yogesh Muley's Page

Vijaykumar Yogesh Muley and Dr. Ravindra Fakirrao Pathre are now colleagues

Mar 29

Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)

"NJ algorithm, you can run using JTT (for DNA as well as protein sequences) or PAM (Dayhoff) model for protein sequences. For ML, you should chose best model. This is a standard protocol. So first decide which is the best model for you alignment…"

Jun 16, 2012

Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)

"In this case, I will suggest you to use kimura-2 parameter. These are the substitution models (at least for kimura, I know for sure) which differs for different sequences. It is possible to choose best model for your multiple sequence alignment in…"

Jun 15, 2012

Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Wilcoxon Signed Rank Test'

"This is a non-parametric test for hypothesis testing when your data do not follow normal distribution. For given two measurements (distributions of values) of the same sample in two different conditions, Wilcox test check whether their population…"

Jun 15, 2012

Deeba Kamil and Vijaykumar Yogesh Muley are now colleagues

Mar 24, 2012

Vijaykumar Yogesh Muley and Pushpa are now colleagues

Jan 7, 2012

Vijaykumar Yogesh Muley joined Prasanna Kumar's group

Barcoding Bacteria

To discuss issues pertaining DNA barcoding bacteriaSee More

Dec 16, 2011

2 Comments

Vijaykumar Yogesh Muley and rohini khanapurkar are now colleagues

Dec 16, 2011

Vijaykumar Yogesh Muley and Prasanna Kumar are now colleagues

Dec 10, 2011

Vijaykumar Yogesh Muley replied to Prasanna Kumar's discussion 'DNA barcoding Marine Bacteria' in the group Marine Barcoding

"Dear Prasanna Kumar, I was talking about generalized approach and certainly my comments would be wrong in case of within species variations. As shown in figure attached herewith, Variations among species are evident using rpoB as compared to 16S…"

Dec 9, 2011

Vijaykumar Yogesh Muley replied to Prasanna Kumar's discussion 'DNA barcoding Marine Bacteria' in the group Marine Barcoding

"16S rRNA sequence is the most stable element in prokaryotic organisms and widely used for phylogenetic or diversity studies. You can use rpoB or some other genes such as Gyrase but analysis become tricky due to frequent horizontal transfer.…"

Dec 9, 2011

Vijaykumar Yogesh Muley replied to Dhivya's discussion 'Statistics in DNA Barcoding !!!'

"First, Its all depend on what you are trying to understand from the barcode data i.e. questions/hypothesis. Second, data should be enough to provide answers to raised questions. Using statistics, not only you can guess about the origin of species…"

Oct 27, 2011

Vijaykumar Yogesh Muley replied to Kris Jett's discussion 'Introductions'

"Hello C. Vadaivalagan, Glad to have heard from you, Thanks. Yes certainly I would like to work with you. So please why dont you mail me brief description of your work on vijay.muley@gmail.com or vijay@iscb.org. Prior to mail, I think you should…"

Oct 27, 2011

Vijaykumar Yogesh Muley joined Conrad Schoch's group