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Taha Alhersh
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Taha Alhersh's Discussions

Species Identification Using Part of DNA Sequence: Evidence from Machine Learning Algorithms

Started this discussion. Last reply by Taha Alhersh Apr 4. 2 Replies

Hi All,If you are interested in the discussion title, please find below a link for my publication, also another copy attached.…Continue

Species classification using DNA sequences VS DNA barcoding

Started this discussion. Last reply by Taha Alhersh Dec 3, 2013. 7 Replies

Hello,I would like to know the differences between species classification via DNA sequences and DNA barcoding? For example:We are using machine learning algorithm to classify (Aquifex aeolicus,…Continue

Tags: Bacteria, Prokaryote, learning, Machine, barcoding

 

Taha Alhersh's Page

Latest Activity

Taha Alhersh replied to Taha Alhersh's discussion 'Species Identification Using Part of DNA Sequence: Evidence from Machine Learning Algorithms'
"Hi Veronique, I have attached a copy of my publication in my previous post, you can find it in the following…"
Apr 4
Veronique Bourdon replied to Taha Alhersh's discussion 'Species Identification Using Part of DNA Sequence: Evidence from Machine Learning Algorithms'
"Hi Tasha I would like to read your article but somehow can only get the abstract. Would it be possible for you to send me the pdf at vero10002@gmail.com ? Thank you"
Apr 4
Taha Alhersh posted a discussion

Species Identification Using Part of DNA Sequence: Evidence from Machine Learning Algorithms

Hi All,If you are interested in the discussion title, please find below a link for my publication, also another copy attached.http://dl.acm.org/citation.cfm?id=2954721.2954773TahaSee More
Dec 7, 2016
Taha Alhersh joined Gaikwad Swapnil Sopan's group
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Problems in DNA barcoding

Dear all,This group is intend to solve problems occurred while analyzing barcode sequences and using appropriate method of analysis.See More
Dec 21, 2015
Taha Alhersh joined Mike Trizna's group
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CBOL Data Analysis Working Group (DAWG)

A place for CBOL DAWG members to interact.
Dec 21, 2015
Taha Alhersh joined Megan A. Milton's group
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BOLD Systems

The Barcode of Life Data Systems (BOLD) is an online workbench that aids collection, management, analysis, and use of DNA barcodes. See More
Dec 21, 2015
Taha Alhersh and Thomas Horn are now colleagues
Dec 4, 2013
Taha Alhersh replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Thanks Thomas for the good wishes :) ... Sure I will. Please let me know if you have any project that I can participate in. Warm regards, Taha "
Dec 3, 2013
Thomas Horn replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Good luck! And let me know when there is a publication to read :-) Cheers Thomas"
Dec 3, 2013
Taha Alhersh replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Dear Thomas, Exactly.  For the feature extraction, we have used all the sequences related to the designated species described in the previous table, which I guess it is the complete genome in our first experiment. In our second experiment, we…"
Dec 1, 2013
Thomas Horn replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Dear Taha, from the biological/taxonomic point of view, classification is the process of finding characteristic features to form/define a class/group (e.g. species). What you describe very much sounds like a DNA Barcoding approach, focusing on…"
Dec 1, 2013
Taha Alhersh replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Dear Thomas,   Thanks for your replay and attachment. Sorry for the confusion caused by my terms. Form computer science (machine learning) and statistics prospective, classification is the problem of identifying to which of a set of categories…"
Nov 30, 2013
Thomas Horn replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"2006 - Recent advances in DNA taxonomy"
Nov 30, 2013
Thomas Horn replied to Taha Alhersh's discussion 'Species classification using DNA sequences VS DNA barcoding'
"Dear Taha, the circumscription and delineation of species based on DNA sequence data (classification) is the field of DNA Taxonomy. DNA Barcoding on the other hand is a) the collection of sequence data of an "universal" locus (animals…"
Nov 30, 2013
Taha Alhersh posted a discussion

Species classification using DNA sequences VS DNA barcoding

Hello,I would like to know the differences between species classification via DNA sequences and DNA barcoding? For example:We are using machine learning algorithm to classify (Aquifex aeolicus, Bacillus subtilis, Aeropyrum pernix and Buchnera sp) which can be downloaded from:ftp://ftp.ncbi.nih.gov/genbank/genomes/Bacteria/the dataset description as follow:SpeciesAccessionSequence #Aquifex aeolicusAE00065751Bacillus…See More
Nov 30, 2013
Taha Alhersh replied to Kris Jett's discussion 'Introductions'
"Hello, My name is Taha Alhersh, and I am applying machine learning methods in biological data. I am working on a project for DNA sequences classification. We have started with DNA sequences from 4 bacteria species (Aquifex aeolicus, Bacillus…"
Nov 29, 2013

Profile Information

Institution/Organization
Independent Research
Title/Position
Other
If Other Title, please specify
Freelance Researcher
I’m involved in, or am interested in the following barcoding initiatives
DNA Barcoding Initiative for Conservation, Database Working Group, Data Analysis Working Group
I’m involved in the following aspects of barcoding:
Analysis of barcode data, Using barcode data for other applications
Current Project(s)
DNA Sequence Classification

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