"Hi Guys,
We've just released a new version of the plugin designed to work with the new Google Fusion Tables API. Google are turning off the old API on January 15, so if you are using Fusion Tables make sure you upgrade your…"
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Steven Stones-Havas's Groups
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Biocode LIMS plugin
49 members
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CBOL Leading Labs Networ…
46 members
Steven Stones-Havas's Page
Latest Activity
Steven Stones-Havas commented on Steven Stones-Havas's group 'Biocode LIMS plugin'"Hi there Suzanne,
Unfortunately there isn't a way to bulk remove traces from a plate. The only way to do this would be to delete the plate, and create it again. We are looking to add this feature pretty soon though, as it has been…"
Steven Stones-Havas replied to Suzanne Nagi's discussion 'Query Taxon' in the group Biocode LIMS plugin"Hi there Suzanne,
Are your reactions in the LIMS set up correctly (linked to the correct records in your FIMS database)? Search for one or more of your sequencing plates, and have a look at the wells (you can either double click on a well to…"
Steven Stones-Havas replied to Ruth Castillo's discussion 'Working with Fusion Tables' in the group Biocode LIMS plugin"Hi there Ruth,
The first thing that comes to mind is that perhaps you haven't set your columns up correctly in the connection dialog. The procedure is the same for as for an excel file, so I would suggest that to test, you take an excel…"
Ruth Castillo commented on Steven Stones-Havas's group 'Biocode LIMS plugin'"Hi, I have started working with the biocode plugin since a week ago and I find it awesome, and I am looking forward to use it further. Everything worked as in the tutorial video (except for the binning parameters, but I already read how to solve…"
Ruth Castillo joined Steven Stones-Havas's group
Biocode LIMS plugin
The Biocode LIMS plugin is a free suite of plugins to Geneious that allow you to track and manage your entire lab workflow, from tissue samples through to Sequence analysis and Genbank Submission. Visit our website to download the plugins.See More
Steven Stones-Havas replied to oliver wooley's discussion 'cannot connect to LIMS' in the group Biocode LIMS plugin"Hi Oliver,
That is a very strange error. Do you get any more information (is there a more details button or similar on the error dialog)? If so can you paste what it says in here so that I can have a look at it.
Does the error happen…"
Steven Stones-Havas replied to Huarong Zhang's discussion 'attach a Gel image' in the group Biocode LIMS plugin"Hi Huarong,
It sounds like you haven't entered 'someuser'@'somehost' correctly. You have to make sure that the user matches a user in your database.
Alternatively you can use the tool "MySQL Workbench"…"
oliver wooley joined Steven Stones-Havas's groupBiocode LIMS plugin
The Biocode LIMS plugin is a free suite of plugins to Geneious that allow you to track and manage your entire lab workflow, from tissue samples through to Sequence analysis and Genbank Submission. Visit our website to download the plugins.See More
Steven Stones-Havas replied to Huarong Zhang's discussion 'attach a Gel image' in the group Biocode LIMS plugin"Hi Huraong,
Sorry for the late reply - I have been travelling.
The statement you're looking for is something like this:
GRANT DELETE ON labbench.gelimages TO 'someuser'@'somehost';if your LIMS database is not called…"
Steven Stones-Havas replied to Suzanne Nagi's discussion 'removing traces' in the group Biocode LIMS plugin"Unfortunately we don't currently have a way to do this, but I think it's an excellent idea for a feature. For the moment the only way to delete all traces on a plate is to either do them one by one, or to delete the entire plate and…"
Suzanne Nagi commented on Steven Stones-Havas's group 'Biocode LIMS plugin'"Hi,
Is there a way to bulk remove traces? I added my trace files to several plates twice and now have repeat sequence entries which are slowing down the analysis. Is there any way to efficiently get rid of these on a plate by plate basis?"
Guy Colling joined Steven Stones-Havas's groupBiocode LIMS plugin
The Biocode LIMS plugin is a free suite of plugins to Geneious that allow you to track and manage your entire lab workflow, from tissue samples through to Sequence analysis and Genbank Submission. Visit our website to download the plugins.See More
Steven Stones-Havas replied to Franck Stefani's discussion 'Column mismatch' in the group Biocode LIMS plugin"Hi Franck,
Are you using an excel file for your FIMS by any chance? We found a problem with annotating documents repeatedly where moving columns around in the excel file could screw up the document annotating. This could also happen if…"
Steven Stones-Havas replied to Huarong Zhang's discussion 'attach a Gel image' in the group Biocode LIMS plugin"Hi Huarong,
Due to the way that we update gel images on the paltes, you need delete permissions on the gel images table in the LIMS database. You need to contact your database administrator, and get them to enable delete permissions on the…"
Profile Information
- Institution/Organization
- Biomatters Ltd
- Title/Position
- Non-governmental organization official
- Website
- http://www.biomatters.com
- I’m involved in, or am interested in the following barcoding initiatives
- Database Working Group, Data Analysis Working Group, Leading Labs Network
- I’m involved in or interested in the following iBOL Working Groups
- WG2.3 Methodological Innovation
- I’m involved in the following aspects of barcoding:
- Management of barcode data, Analysis of barcode data
- Current Project(s)
- Moorea Biocode
Comment Wall (1 comment)
- At 8:20am on June 28, 2010,
Matthew Sileo said… - Hello and welcome!
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