"Here are few tips,
use these sequences to fish out similar sequences (homologs) from NCBI using BLAST tool. Search against Plant database or taxanomy group. then select homologs that are useful for you analysis and get sequences. Do multiple…"
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Shari Laprise's Discussions
New to barcoding - need help with analysis
My colleage and I are new to DNA barcoding and we need help with data analysis. We have sequenced matK, rbcL, and trnH-psbA in six tree species, and have used this data to determine the presence of…Continue
Started Aug 26, 2010
Shari Laprise's Page
Latest Activity
Vijaykumar Yogesh Muley replied to Shari Laprise's discussion 'New to barcoding - need help with data analysis' in the group Plants
Shari Laprise added a discussion to the group Plants
New to barcoding - need help with data analysis
My colleage and I are new to DNA barcoding and we need help with data analysis. We have sequenced matK, rbcL, and trnH-psbA in six tree species, and have used this data to determine the presence of a barcode gap. But now we are stuck! We are unsure how to proceed - analyses to perform, including statistical analyses. Any help would be greatly appreciated!Thanks in advance!See More
Shari Laprise posted a discussionNew to barcoding - need help with analysis
My colleage and I are new to DNA barcoding and we need help with data analysis. We have sequenced matK, rbcL, and trnH-psbA in six tree species, and have used this data to determine the presence of a barcode gap. But now we are stuck! We are unsure how to proceed - analyses to perform, including statistical analyses. Any help would be greatly appreciated!Thanks in advance!See More
Profile Information
- Institution/Organization
- Babson College
- Title/Position
- Researcher/Faculty member
- I’m involved in, or am interested in the following barcoding initiatives
- Plant Working Group
- I’m involved in the following aspects of barcoding:
- Labwork/generating barcode sequences, Management of barcode data, Analysis of barcode data
- Current Project(s)
- Use of trnH-psbA, matK, and rbcL as barcodes for native vs. invasive plants.
Comment Wall (1 comment)
- At 10:07am on August 10, 2010,
Matthew Sileo said… - Hello and welcome!
Thank you for taking the time to join. Here are a few things that you can do in the community.
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-Matt Sileo
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