"I am interested in hearing what you finally came up with and how you went about it.
For me, First I construct different types of trees using the options available to me then cross them off one by one. I never use NJ especially when its a…"
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Rasika Bhagwat's Groups
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Problems in DNA barcoding
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CBOL Data Analysis Worki…
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Plants
113 members
Rasika Bhagwat's Discussions
Wilcoxon Signed Rank Test
2 Replies
Dear all,I am Rasika. I am working on DNA barcoding of plants in NCL, Pune, India.Can anobody help me to understand and perform Wilcoxon Signed Rank test?Thanks and RegardsRasikaContinue
Started this discussion. Last reply by Rasika Bhagwat Jun 16, 2012.
Rasika Bhagwat's Page
Latest Activity
Fiona Nelima Mumoki replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)
Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)"NJ algorithm, you can run using JTT (for DNA as well as protein sequences) or PAM (Dayhoff) model for protein sequences. For ML, you should chose best model. This is a standard protocol. So first decide which is the best model for you alignment…"
Rasika Bhagwat replied to Rasika Bhagwat's discussion 'Wilcoxon Signed Rank Test'"Hey, Thanks for your reply, will try and get back to you.
Rasika"
Rasika Bhagwat replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)"Hey thanks for your reply.
I tried the suggestion given by you. I found a best model for my data, but that option is not there in model/selection when I construct NJ or ML. So is it the case that I have to come down as 1st model if not then second…"
Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)"In this case, I will suggest you to use kimura-2 parameter. These are the substitution models (at least for kimura, I know for sure) which differs for different sequences. It is possible to choose best model for your multiple sequence alignment in…"
Vijaykumar Yogesh Muley replied to Rasika Bhagwat's discussion 'Wilcoxon Signed Rank Test'"This is a non-parametric test for hypothesis testing when your data do not follow normal distribution. For given two measurements (distributions of values) of the same sample in two different conditions, Wilcox test check whether their population…"
Rasika Bhagwat posted a discussionWilcoxon Signed Rank Test
Dear all,I am Rasika. I am working on DNA barcoding of plants in NCL, Pune, India.Can anobody help me to understand and perform Wilcoxon Signed Rank test?Thanks and RegardsRasikaSee More
Rasika Bhagwat replied to Handan's discussion 'MatK gene region in angiosperm' in the group Problems in DNA barcoding"Hi
Which primers you are using, becoz I am also facing the same problem.
Rasika
"
Fiona Nelima Mumoki replied to Rasika Bhagwat's discussion 'Data analysis using MEGA' in the group CBOL Data Analysis Working Group (DAWG)"Hmmmm.....good question. Please tell me you solved this problem and what did you conclude?
I am clear on when to use Maximam likelihood, NJ and Minimum evolution options but I am not sure about Kimura 2. Care to share the…"
Rasika Bhagwat is attending Kris Jett's event
Fourth International Barcode of Life Conference at University of Adelaide
November 28, 2011 to December 3, 2011
The University of Adelaide will host the first-ever Southern Hemisphere barcode conference, co-organized by CBOL and co-hosted by several biodiversity institutions and initiatives in Australia. The goals of the conference are: highlighting the great progress barcoding has made since the Mexico City Conference in November 2009; learning about barcoding activities in Australia and the region; and bringing barcoders together to exchange ideas and plan new activities. The week’s events will start…See More
Deeba Kamil left a comment for Rasika Bhagwat"Hello Rasika, i am attending the conference. it will be good if u also attend. i can get one company.....
"
Profile Information
- Institution/Organization
- National Chemical Laboratory
- Title/Position
- Doctoral student
- I’m involved in, or am interested in the following barcoding initiatives
- DNA Barcoding Initiative for Conservation, Plant Working Group, Database Working Group, Data Analysis Working Group, Leading Labs Network
- I’m involved in or interested in the following iBOL Working Groups
- WG1.2 Land Plants, WG2.3 Methodological Innovation
- Keywords about my barcoding projects (separate each choice with a comma)
- plants, NCL
- I’m involved in the following aspects of barcoding:
- Fieldwork/specimen collecting, Labwork/generating barcode sequences, Management of barcode data, Analysis of barcode data, Using barcode data in taxonomy/systematic biology, Using barcode data for other applications
Comment Wall (3 comments)
- At 4:02am on November 18, 2011, Deeba Kamil said…
Hello Rasika, i am attending the conference. it will be good if u also attend. i can get one company.....
- At 1:27pm on December 3, 2009,
Mike Trizna said… - Hi Rasika,
I just received the message you sent to the Data Analysis Working Group. Could you please repost this question as a new Discussion topic or as a Comment within the group? This way, any answers to the question can be shared for others who might be having the same problem.
I also recommend doing the same in the Plant Barcoding group. In fact, Karen James actually started a Discussion thread specifically about plant barcoding primer issues.
Thanks!
--Mike Trizna
- At 12:56pm on December 2, 2009,
Kris Jett said… - Hello and welcome!
Thank you for taking the time to join. Here are a few things that you can do in the community.
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-Kris Jett
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