"I see. Thank you for your reply, Mr Suang Rungpragayphan.
So does that mean although trnH-psbA is a noncoding gene, we still have to annotate which is trnH and which is psbA?
Let's say that if I am unsure which region is trnH or psbA from my…"
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Questions regarding Annotation of trnH-psbA sequence
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Greetings everyone,I am currently doing a study on DNA barcoding for several species of Malaysian herbal plants for my postgraduate study. The barcodes that I am using are rbcL, matK and trnH-psbA.In…Continue
Tags: species, trnH-psbA, herbal, barcoding, DNA
Started this discussion. Last reply by Muhammad Sharir Abdul Rahman Mar 27.
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Muhammad Sharir Abdul Rahman replied to Muhammad Sharir Abdul Rahman's discussion 'Questions regarding Annotation of trnH-psbA sequence'
Suang Rungpragayphan replied to Muhammad Sharir Abdul Rahman's discussion 'Questions regarding Annotation of trnH-psbA sequence'"I guess it should be like this.
<1..55 (for example)/product="trnH"
36..310/product="trnH-psbA intergenic…"
Muhammad Sharir Abdul Rahman posted a discussionQuestions regarding Annotation of trnH-psbA sequence
Greetings everyone,I am currently doing a study on DNA barcoding for several species of Malaysian herbal plants for my postgraduate study. The barcodes that I am using are rbcL, matK and trnH-psbA.In order to upload some of my findings to Genebank and BOLD, I need to do the annotations for the sequences (after I have transferred them into Sequin files). I have no problem for annotation process of my rbcL and matK regions since I can label them for instance like this: 'nucleotide 1-655 = partial…See More
Profile Information
- Institution/Organization
- University Kuala Lumpur (UniKL) Malaysian Institute of Chemical and BioEngineering Technology (MICET)
- Title/Position
- Other
- If Other Title, please specify
- postgraduate student
- I’m involved in, or am interested in the following barcoding initiatives
- Plant Working Group
- Keywords about my barcoding projects (separate each choice with a comma)
- Malaysian herbs
- I’m involved in the following aspects of barcoding:
- Labwork/generating barcode sequences
- Current Project(s)
- Development of DNA barcoding for specific families of the Malaysian herbal plants
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