"In the different fungi that I have studied, only some Annulohypoxylon specimens have long ITS region (without including the last five bases from 18S), and including 5.8S is around 730 bp."
international online community for dna barcoding professionals
María P. Martín's Groups
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Network of European Lead…
23 members
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QBOL
16 members
María P. Martín's Discussions
CBOL proposal standard for fungi
Dear Conrad,Thanks for posting the CBOL proposal for fungi. About the standards, just some days ago, I have come back to review sequences from Bremia lactuca complex. In these species, the ITS2…Continue
Started Jun 30, 2012
María P. Martín's Page
Latest Activity
María P. Martín replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group FungiMaría P. Martín replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Related to point 5, and the inclusion of "NNN". I was quite worried related to the long ITS2 region with multiple repetions in some species, such as Bremia lactucae complex (around 2500 bp) . At least from herbarium material, it was…"
María P. Martín posted a discussionCBOL proposal standard for fungi
Dear Conrad,Thanks for posting the CBOL proposal for fungi. About the standards, just some days ago, I have come back to review sequences from Bremia lactuca complex. In these species, the ITS2 region have multiple repetions and the length of this region can arrived to more that 2500 bp. We have to do always the PCR in parts and usually we do not have the complete 5.8S sequence. In these cases, such as this genus/specimens, it would be possible to have in the 5.8S some NNNNN in barcode…See More
María P. Martín replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi"Dear all,
Related to the deleted 9th criterion "barcoding including introns". In my opinion, we should include that the intron/intross position must be annotate. In ascomycotina, they are many exemples where two ITS…"
María P. Martín replied to Yan Li's discussion 'organelle isolation'"Dear Yan Li,
Some years ago I use a protocol to isolated chloroplasts and mitochondria when I was visiting SDA, ARS , United Stated Department Agricultural. Agricultural Research Service. Plant Stress and Water conservation…"
María P. Martín might attend Kris Jett's event
Fourth International Barcode of Life Conference at University of Adelaide
November 28, 2011 to December 3, 2011
The University of Adelaide will host the first-ever Southern Hemisphere barcode conference, co-organized by CBOL and co-hosted by several biodiversity institutions and initiatives in Australia. The goals of the conference are: highlighting the great progress barcoding has made since the Mexico City Conference in November 2009; learning about barcoding activities in Australia and the region; and bringing barcoders together to exchange ideas and plan new activities. The week’s events will start…See More
María P. Martín replied to Rebecca Yahr's discussion 'LSU - multiple bands' in the group Fungi"Dear Rebecca,
If you have multiple bands with high concentration of DNA, it would be good at the beginning of your study to run a electrophoresis gel, cut every band and purify separately (even though that you comment that you…"
María P. Martín joined Lorenzo Lombard's group
ECBOL
For all research groups active in barcode development and/or research in Europe and developing countries in Africa.
María P. Martín joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Profile Information
- Institution/Organization
- Real Jardín Botánico, CSIC
- Title/Position
- Researcher/Faculty member
- If Other Title, please specify
- Head of Mycological Department
- I’m involved in, or am interested in the following barcoding initiatives
- TreeBOL, DNA Barcoding Initiative for Conservation, Plant Working Group, Leading Labs Network
- I’m involved in or interested in the following iBOL Working Groups
- WG1.2 Land Plants, WG1.3 Fungi, WG1.5 Agricultural and Forestry Pests and Their Parasitoids, WG1.10 Polar Life
- Keywords about my barcoding projects (separate each choice with a comma)
- Ascomycota, Basidiomycota (Order Boletales and coticiaceous), Oomycota, parasitic plants and fungi
- I’m involved in the following aspects of barcoding:
- Fieldwork/specimen collecting, Museum work/specimen curation, Labwork/generating barcode sequences, Management of barcode data, Analysis of barcode data, Using barcode data in taxonomy/systematic biology, Using barcode data for other applications, Organizing/managing barcoding projects, Science policy related to barcoding
- Current Project(s)
- Basidiomycota:
-Plan Nacional de I+D+I del MEC, CGL2009-07231 BOS (2009-2011).”Biogeografía de Corticiáceos (Basidiomycota) Macaronésicos: La conexión africana”. Real Jardín Botánico, CSIC. Prof. M. Teresa Tellería. 3 years.
- SYNTHESYS & European Commission of Transnational Access to major Research Infrastrucutres (EC-funded IHP Programme) 2010 (SYNTHESYS II). Different projects, such us identification of ectomycorrhizal fungi in the tips o identification of Gasteromycetes from Balkan Peninsula.
Ascomycota
- Ministerio de Ciencia y Tecnología, CGL2007-66734-C03-01/BOS. “Flora Liquenológica Ibérica:
- SYNTHESYS & European Commission of Transnational Access to major Research Infrastrucutres (EC-funded IHP Programme) 2010 (SYNTHESYS II),
“Global diversity of Umbilicaria species (Ascomycota) as an effect of the climate changes based on molecular and morphological evidence: recent progress and remaining changes”
Oomycota:
- United States Department of Agriculture USDA 2008. “Saprolegnia Genome Sequencing”. Septiembre 2009- Septiembre 2011. Dr. Brett Tyler (Virginia Bioinformatics Institute, Virginia Tech).
- People Marie Curie Actions. Marie Curie Initial Training Networks (Itn). Call: FP7-People-ITN-2008. “Sustainable Approaches to Reduce Oomycete (Saprolegnia) Infections in Aquaculture” (SAPRO).
- Plan Nacional de I+D+I del MEC, CGL2009-10032 BOS (2009-2011).”Reevaluación de las especies de Saprolegniales (Oomicetes) involucradas en la conservación de animales acuáticos amenazados”. Real Jardín Botánico, CSIC. Dr. Javier Diéguez-Uriebondo.
Comment Wall (1 comment)
- At 9:59am on December 2, 2010,
Matthew Sileo said… - Hello and welcome!
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