international online community for dna barcoding professionals
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Conrad Schoch
- Male
- United States
- Blog Posts
- Discussions (28)
- Events
- Groups (7)
- Photos (1)
- Photo Albums
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Conrad Schoch's Groups
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Plants
113 members
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Biocode LIMS plugin
49 members
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CBOL Data Analysis Worki…
58 members
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Connect Group Moderators
28 members
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QBOL
16 members
Conrad Schoch's Page
Latest Activity
Sakae Horisawa joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Larissa Trierveiler Pereira joined Conrad Schoch's groupFungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
María P. Martín replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"In the different fungi that I have studied, only some Annulohypoxylon specimens have long ITS region (without including the last five bases from 18S), and including 5.8S is around 730 bp."
Andrew Miller replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Great discussion! I agree with Bevan regarding the wording of (d) in that you are referring to "multiple sequence alignments" and not "multiple trace file alignments", the latter of which is a mandatory requirement for any…"
María P. Martín replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Related to point 5, and the inclusion of "NNN". I was quite worried related to the long ITS2 region with multiple repetions in some species, such as Bremia lactucae complex (around 2500 bp) . At least from herbarium material, it was…"
Ursula Eberhardt replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Thanks for starting the discussion!
I would agree with Pradeep Kumar Divakar that one should allow several divergent ITS sequences per individual, and thus rephrase #8 'Multiple, divergent ITS barcode sequences are possible for a…"
Pradeep Kumar Divakar replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Hi Conrad, It's great discussion. I suggest having the posibility to include different ITS copies found in the same thallus. There are some cases where different ITS can be found in the same thallus within the range of a single species ITS…"
Kerstin Voigt replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"Great points, Conrad. I like the comprehensive outline of the requirements for the ITS fungal barcode very much. Also thanks to all contributors to this discussion round, which I see that divergent ITS barcodes are a major issue of. I would suggest…"
Bevan Weir replied to Conrad Schoch's discussion 'ITS barcode requirements V2' in the group Fungi"#8: Multiple, divergent ITS barcode sequences are possible for a single species.
Interesting. So barcodes could be submitted from a genome sequence (or clone libraries) with all the different haplotypes? These could well be different than the…"
Conrad Schoch added a discussion to the group FungiITS barcode requirements V2
Please comment so I can recommend a final set of ITS standards to GenBank for implementation of the BARCODE flag before the end of July.These are also available as an attached word file on the site. Contentious areas for focus are indicated in blue:Barcode Standards1. Standardized sequence title should be "Fungal ITS barcode".2. The barcode includes the complete ITS1 spacer, 5.8S gene, and ITS2 spacer, presented as a single contiguous sequence in the correct 5'-to-3' order. The barcode…See More
Eleonora Egidi joined Conrad Schoch's groupFungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Moslem joined Conrad Schoch's groupFungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Keith Seifert replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi"Hi everyone,
There are a lot of issues brought up by different people in the discussion, so thanks for that.
What will happen at BOLD is that they will create an informatics pipeline that checks sequences submitted as ITS sequences to be sure that…"
Profile Information
- Institution/Organization
- NIH/NLM/NCBI
- Title/Position
- Other
- If Other Title, please specify
- Staff Scientist
- I’m involved in or interested in the following iBOL Working Groups
- WG1.3 Fungi
- I’m involved in the following aspects of barcoding:
- Labwork/generating barcode sequences, Management of barcode data, Analysis of barcode data, Using barcode data in taxonomy/systematic biology, Organizing/managing barcoding projects
- Current Project(s)
- FunBOL
Conrad Schoch's Photos
Comment Wall (3 comments)
- At 9:50am on December 6, 2010,
BUYCK Bart said… - Hi Conrad ! I am in Florida at this moment, collecting with Valerie untill Christmas for our phylogeny and barcode projects
- At 12:46am on October 1, 2010,
Ryan Kepler said… - When you asked me to be part of a BARcoding effort, I thought there would be beer involved...
- At 11:29am on September 30, 2010,
Matthew Sileo said… - Hello and welcome!
Thank you for taking the time to join. Here are a few things that you can do in the community.
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-Matt Sileo
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