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international online community for dna barcoding professionals
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Conrad Schoch
- Male
- United States
- Blog Posts
- Discussions (1)
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- Groups (7)
- Photos (1)
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Conrad Schoch's Groups
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Plants
94 members
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Biocode LIMS plugin
35 members
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CBOL Data Analysis Worki…
54 members
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Connect Group Moderators
28 members
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QBOL
15 members
Conrad Schoch's Page
Latest Activity
Keith Seifert replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi
Hi everyone,
There are a lot of issues brought up by different people in the discussion, so thanks for that.
What will happen at BOLD is that they will create an informatics pipeline that checks sequences submitted as ITS sequences to be sure that…
Bevan Weir replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi
Hi,
On points 4&5 are these inteneted to be minimum standards or strict limits? Would a longer sequence still meet the barcode critera?
Alignment of sequences would certainly be easier if these were strict limits, however enforcing these…
María P. Martín replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi
Dear all,
Related to the deleted 9th criterion "barcoding including introns". In my opinion, we should include that the intron/intross position must be annotate. In ascomycotina, they are many exemples where two ITS…
Ursula Eberhardt replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi
Hi everybody,
Thanks for starting this discussion and for posting the draft. Points 2-6 sound fine to me as they are. A few comments
Add 1. Who will be giving this title to the sequence? The sequence submitter? Genbank? Or is this definition meant…
Dominik Begerow replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi
Hi all,
thanks Conrad and Keith for your work. I especially like 5. - which makes life much easier and took long discussion in the past. To 7. I would prefer the bold and italic version, because it would prevent us from discussions which would be…
Definition of an acceptable Fungal ITS barcode
Hi all,We need to get some thoughts on details of how we want to deal with ITS barcodes. I post a first draft of conditions we want to consider for submission, started by Keith Seifert below. Please comment.Definition of an acceptable Fungal ITS barcode Database administrators will need a formal, somewhat mechanical definition of what constitutes an ITS barcode of acceptable quality. Note that by the strict definition of a barcode in the CBOL standard, barcode sequences must already be…See More
Conrad Schoch added a discussion to the group Fungi
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Anna Lucinda joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Bhushan Shrestha joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Anoop.B.S. joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Dhanushka Udayanga joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Dimuthu Sandarenu Manamgoda joined Conrad Schoch's group
Fungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Deeba Kamil and Laval Valérie joined Conrad Schoch's group
Conrad Schoch replied to Conrad Schoch's discussion 'Annotation of proteins with Sequin' in the group Fungi
I attach Jos Houbraken's set as an example of a good annotation here.
Profile Information
- Institution/Organization
- NIH/NLM/NCBI
- Title/Position
- Other
- If Other Title, please specify
- Staff Scientist
- I’m involved in or interested in the following iBOL Working Groups
- WG1.3 Fungi
- I’m involved in the following aspects of barcoding:
- Labwork/generating barcode sequences, Management of barcode data, Analysis of barcode data, Using barcode data in taxonomy/systematic biology, Organizing/managing barcoding projects
- Current Project(s)
- FunBOL
Conrad Schoch's Photos
Comment Wall (3 comments)
- At 9:50am on December 6, 2010,
BUYCK Bart said… - Hi Conrad ! I am in Florida at this moment, collecting with Valerie untill Christmas for our phylogeny and barcode projects
- At 12:46am on October 1, 2010,
Ryan Kepler said… - When you asked me to be part of a BARcoding effort, I thought there would be beer involved...
- At 11:29am on September 30, 2010,
Matthew Sileo said… - Hello and welcome!
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