"#8: Multiple, divergent ITS barcode sequences are possible for a single species.
Interesting. So barcodes could be submitted from a genome sequence (or clone libraries) with all the different haplotypes? These could well be different than the…"
international online community for dna barcoding professionals
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Bevan Weir
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Bevan Weir's Groups
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BOLD Systems
96 members
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Biocode LIMS plugin
49 members
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Fungi
107 members
Bevan Weir's Page
Latest Activity
Bevan Weir replied to Conrad Schoch's discussion 'Definition of an acceptable Fungal ITS barcode' in the group Fungi"Hi,
On points 4&5 are these inteneted to be minimum standards or strict limits? Would a longer sequence still meet the barcode critera?
Alignment of sequences would certainly be easier if these were strict limits, however enforcing these…"
Bevan Weir joined Megan A. Milton's group
BOLD Systems
The Barcode of Life Data Systems (BOLD) is an online workbench that aids collection, management, analysis, and use of DNA barcodes. See More
Bevan Weir replied to Conrad Schoch's discussion 'Annotation of proteins with Sequin' in the group Fungi"Hi, do you have a nice reference sequence we can use with the introns/exons annotated?"
Bevan Weir replied to Marieka Gryzenhout's discussion 'Collecting macrofungi for barcoding' in the group Fungi"Hi,
What I have done in the past is put a small amount of fresh tissue in a buffer (e.g. CTAB) in a 1.5 mL tube, then dry down the rest of the specimen for the herbarium. You will need to have collection codes to link the samples of course.…"
Conrad Schoch replied to Bevan Weir's discussion 'GenBank submission of sequences from barcoding paper' in the group Fungi"For those not already submitted we can do a batch submission through the Biolomics database. We will still need chromatograms to make some of these (the ITS sequences) barcodes however."
Bevan Weir added a discussion to the group Fungi
GenBank submission of sequences from barcoding paper
Hi, What was the final verdict for submitting the sequences that we produced for the barcoding paper? Are we supposed to do it ourselves indivudulally, or is someone doing it for all the sequences in one batch submission? Thanks, BevanSee More
Bevan Weir is attending Kris Jett's event
Fourth International Barcode of Life Conference at University of Adelaide
November 28, 2011 to December 3, 2011
The University of Adelaide will host the first-ever Southern Hemisphere barcode conference, co-organized by CBOL and co-hosted by several biodiversity institutions and initiatives in Australia. The goals of the conference are: highlighting the great progress barcoding has made since the Mexico City Conference in November 2009; learning about barcoding activities in Australia and the region; and bringing barcoders together to exchange ideas and plan new activities. The week’s events will start…See More
Bevan Weir replied to Conrad Schoch's discussion 'Problems with ITS' in the group Fungi"ITS also does not always work for species discrimination in the Ascomycota as well, but I support an ITS barcode, because we need something that will work for all fungi. If the database is well populated then it will be apparent if a match to more…"
Bevan Weir joined Steven Stones-Havas's group
Biocode LIMS plugin
The Biocode LIMS plugin is a free suite of plugins to Geneious that allow you to track and manage your entire lab workflow, from tissue samples through to Sequence analysis and Genbank Submission. Visit our website to download the plugins.See More
Bevan Weir joined Conrad Schoch's groupFungi
To provide up-to-date information on fungal barcoding and to facilitate communication and the development of collaboration.
Profile Information
- Institution/Organization
- Landcare Research
- Title/Position
- Researcher/Faculty member
- I’m involved in or interested in the following iBOL Working Groups
- WG1.3 Fungi
- I’m involved in the following aspects of barcoding:
- Museum work/specimen curation, Labwork/generating barcode sequences, Analysis of barcode data, Using barcode data in taxonomy/systematic biology
- Current Project(s)
- Colletotrichum, Phytophthora
Comment Wall (1 comment)
- At 8:14am on October 22, 2010,
Matthew Sileo said… - Hello and welcome!
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