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Fungi Discussions (16)

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Discussions	Replies	Latest Activity
Definition of an acceptable Fungal ITS barcode Hi all, We need to get some thoughts on details of how we want to deal with ITS barcodes. I post a first draft of conditions we want to con… Started by Conrad Schoch	5	Feb 15 Reply by Keith Seifert
Annotation of proteins with Sequin Hi all, I will try to submit specific info on determining the amino acids for GenBank with Sequin here soon. Feel free to discuss this and… Started by Conrad Schoch	2	Oct 26, 2011 Reply by Conrad Schoch
Collecting macrofungi for barcoding Hi all I am about to go on an official barcoding trip in South Africa. Besides the small ascomycetes that is more my specialty, I will al… Started by Marieka Gryzenhout	1	Oct 3, 2011 Reply by Bevan Weir
GenBank submission of sequences from barcoding paper Hi, What was the final verdict for submitting the sequences that we produced for the barcoding paper? Are we supposed to do it ourselves… Started by Bevan Weir	1	Jul 28, 2011 Reply by Conrad Schoch
Problems with ITS So far it looks like we have enough data to recommend ITs as barcode for fungi and we discussed this in some detail in Amsterdam. If you ha… Started by Conrad Schoch	9	Jul 27, 2011 Reply by Arthur Schuessler
Species and barcoding (Thorsten's proposed collaborative project) I though it is probably more efficient to start a discussion around Thorsten species delimitation suggestion. I pasted his email again bel… Started by Conrad Schoch	3	May 23, 2011 Reply by Laszlo G. Nagy
Defining the boundaries of the ITS barcode Many people truncate their ITS sequences to begin with the last bases of the 18S, which facilitates alignment with some algorithms: CATTA… Started by Keith Seifert	5	May 18, 2011 Reply by Bryn T. M. Dentinger
PCR protocol Hi Conard, As per your suggestion, I am hereby adding a PCR protocol for MCM7 gene. Best primer combinations and annealing temperature: Fo… Started by Pradeep Kumar Divakar	11	May 11, 2011 Reply by Conrad Schoch
RPB1 and 2 problems It seems that several people are having problesm amplifying RPB1 and RPB2. please use this to discuss your issues here. This is stating the… Started by Conrad Schoch	15	May 6, 2011 Reply by Arthur Schuessler
Mortierella exposed Speaking of ITS sequencing of types, here's a real dynamite study: Nagy et al New Phytol, in press (http://onlinelibrary.wiley.com/doi/10… Started by Henrik Nilsson	3	May 1, 2011 Reply by Conrad Schoch