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Environmental Barcoding

Members: 56
Latest Activity: Mar 10

Discussion Forum

Tenure track position in environmental barcoding open at the Museum Koenig, Bonn

The Zoological Research Museum A. Koenig (ZFMK) in Bonn, Germany, is looking for a researcher with experience in NGS technologies, bioinformatics and ideally ecology.This position will form the basis…Continue

Tags: metagenomics, metabarcoding, position, job

Started by Jonas Astrin Feb 6, 2013.

Saturation of a run

HelloNIce to see some of you at Adelaide, and the research is awesome.  We pyrosequence fungal endophytes (fungi occurring inside plant tissues) directly from the plant material, and analyse the…Continue

Started by Marieka Gryzenhout Feb 10, 2012.

COI reference database

Dear all, does someone know if there is a COI database with curated and taxonomically assigned sequence downloadable somewhere (similar to the Silva database for ribosomal genes)? This would greatly…Continue

Started by Frederic Sinniger Aug 23, 2011.

454 analyses of COI

Hi all,What are people using to analyse their 454 datasets?  In particular, how are you dealing with homopolymer errors?  Continue

Started by Douglas Yu Aug 24, 2010.

My Comment Wall

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Comment by Stephane Boyer on September 29, 2013 at 1:34am

New paper on the diet of endangered carnivorous landsnails endemic to New Zealand: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone....

Comment by Mehrdad Hajibabaei on January 13, 2013 at 11:38pm

Dear all,

Happy New Year!
A new open access paper on Environmental Barcoding:

http://www.biomedcentral.com/1472-6785/12/28

Comment by k.sathis kumar on August 23, 2012 at 5:24am

hai all, i am doing DNA barcoding in earthworms.

Comment by Stephane Boyer on August 14, 2011 at 1:41am

Hi all,

I am interested in the barcoding of environmental samples, historical or ancient DNA and molecular diet analyses.

Comment by Prasanna Kumar on May 27, 2011 at 3:37am
free floating hatched out egg masses was successfully barcoded for species delineation. will this work falls under scope of environmental barcoding?
Comment by Iloh Andrew Chibuzor on May 8, 2011 at 1:35pm
Thanks Mehrdad for the information
Comment by Mehrdad Hajibabaei on April 18, 2011 at 3:26pm

Dear all,


FYI, a new open access paper on Environmental Barcoding:

 

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone....

 

Comment by rebecca nakacwa on November 10, 2010 at 4:33am
l have been involved in barcoding of soil nematodes and l use them as bio-indicator for the environment
Comment by Ahmed Rahaman Ademolu on October 24, 2010 at 12:45pm
My special interest is related to the enviroment i.e bio indicators and pollinators diversity. I believe the group will be of great benefit for me.
Comment by Douglas Yu on August 24, 2010 at 9:20pm
Hi all,

I'm using the QIIME pipeline to analyse 454 reads of COI amplified from malaise trap samples. What are people using to (1) assign taxonomies (I'm using Munch et al.'s SAP for now) and (2) correct for homopolymer errors?
doug
 

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