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Hi all,
I am working on DNA barcoding of Dalbergia in India. Currently, I am analysing the different loci using MEGA 5. My question is while constructing NJ tree which option should I select, uncorrected p-distance or kimura-2-parameter? I have seen papers using either of them and I also read that there is no considerable difference in output. Can anybody help me to understand both the parameters correctly?
Thanks in anticipation
Best regards
Rasika
Tags:
Hmmmm.....good question. Please tell me you solved this problem and what did you conclude?
I am clear on when to use Maximam likelihood, NJ and Minimum evolution options but I am not sure about Kimura 2. Care to share the light?
Thanks,
Fiona.
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